PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 153aa    MW: 17219.6 Da    PI: 9.2037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1970115352
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++aa+ +
  Vang11g16950.1  70 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFATAEEAARAYDAAAIS 115
                     9*******.**********954...4*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-2669115IPR001471AP2/ERF domain
PROSITE profilePS5103220.87769114IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1969117IPR016177DNA-binding domain
SMARTSM003806.7E-2869137IPR001471AP2/ERF domain
PRINTSPR003676.2E-127081IPR001471AP2/ERF domain
CDDcd000182.84E-1770101No hitNo description
PfamPF008472.6E-1370114IPR001471AP2/ERF domain
PRINTSPR003676.2E-1292108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MCGGSIISDF IQVDIKNVPE STTHRLFYQL HTFNATSSST LNKVEEPCEK LKNSRVVAQK  60
AGARVRKNAY RGIRRRPWGK WAAEIRDPRK GVRVWLGTFA TAEEAARAYD AAAISNLESF  120
LGLEHEQLPM QPLPLPEWDP LHDVVLSNHH LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1670114651ATERF1
3gcc_A3e-1670114651ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-114AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507851.12e-86PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
SwissprotO222591e-31ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0S3R9D96e-90A0A0S3R9D9_PHAAN; Uncharacterized protein
STRINGGLYMA09G04630.18e-32(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-24ERF family protein